Hello
what i understood is you want to animate a DOM to fade away .This is very easily achievable by GSAP using
$(document).ready(function(){
var logo = document.getElementById("logo");
var tl = new TimelineMax();
.to(logo,5,{scale: 0,opacity: 0}); //here i have assumed you have a logo div with id = logo and then in 5 sec it wil shrink to 0 smoothly fading away.You can add any effects you want in the options array such as rotation ,alpha.x ,y etc.
});
Thanks